Sb pdb

SB's thoughts on getting PDB coordinates into CHARMM
Note: For the time being, this is not intended as tutorial material; instead, I want to compare various approaches that I have found / explored.

One glaring omission from the following compilation is the use of MMTSB in this context

I have taken a reasonably detailed look at
 * http://www.charmm-gui.org
 * http://www.charmming.org
 * A useful read is a posting by Rick Venable in the CHARMM forum.
 * And then, of course, one may think about doing it oneself

Further problems

 * alternate coordinates ???